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16. Tuorto F, Herbst F, Alerasool N, Bender S, Popp O, Federico G, et al. The tRNA methyltransferase Dnmt2 is required for accurate polypeptide synthesis during haematopoiesis. EMBO J (2015) 34(18):235062. doi:

Genome Biol. 2013;14:R42. De Paoli-Iseppi R, Deagle BE, McMahon CR, Hindell MA, Dickinson JL, Jarman SN. Measuring animal age with DNA methylation: from humans to wild animals. Front Genet. 2017;8:106. Søraas A, Matsuyama M, de Lima M, Wald D, Buechner J, Gedde-Dahl T, Søraas C, Chen B, Ferrucci L, Dahl J, et al. Epigenetic age is a cell-intrinsic property in transplanted human hematopoietic cells. Aging Cell. 2019;18(2):e12897. 60. Hodes GE, Pfau ML, Purushothaman I, Ahn HF, Golden SA, Christoffel DJ, et al. Sex Differences in Nucleus Accumbens Transcriptome Profiles Associated with Susceptibility versus Resilience to Subchronic Variable Stress. J Neurosci (2015) 35(50):1636276. doi: Teschendorff AE. Epigenetic clocks galore: a new improved clock predicts age-acceleration in Hutchinson Gilford Progeria Syndrome patients. Aging. 2018;10(8):1799800. MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares I, et al. Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.

37. Kang HJ, Kim JM, Lee JY, Kim SY, Bae KY, Kim SW, et al. BDNF promoter methylation and suicidal behavior in depressive patients. J Affect Disord (2013) 151(2):67985. doi: 1. NIMH. Depression Basics. U. S. Department of Health and Human Services National Institutes of Health NIH Publication No. 19-MH-8079 Revised 2016. (2016). p. 16. Available at: El Khoury LY, Gorrie-Stone T, Smart M, Hughes A, Bao Y, Andrayas A, Burrage J, Hannon E, Kumari M, Mill J, Schalkwyk LC. Properties of the epigenetic clock and age acceleration. bioRxiv. 2018;363143. The Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, UK Van Dongen J, Nivard MG, Willemsen G, Hottenga JJ, Helmer Q, Dolan CV, Ehli EA, Davies GE, van Iterson M, Breeze CE, et al. Genetic and environmental influences interact with age and sex in shaping the human methylome. Nat Commun. 2016;7:11115. 7. Rey R, Chauvet-Gelinier JC, Suaud-Chagny MF, Ragot S, Bonin B, dAmato T, et al.

DNA methylation controls the timing of astrogliogenesis through regulation of JAK-STAT signaling. Development (2005) 132(15):334556. doi: Liang, Z. , Shen, L. , Cui, X. , Bao, S. , Geng, Y. , Yu, G. , Yu, H. (2018). DNA N6-Adenine Methylation in Arabidopsis thaliana. Developmental Cell, 45(3), 406. Iurlaro, M. , Ficz, G. , Oxley, D. , Raiber, E. A. , Bachman, M. , Booth, M. J. , Reik, W. (2013). A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation. Genome Biology, 14(10), 111. Wu, H. , Wu, X. , Shen, L. , & Zhang, Y. (2014). Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing. Nature Biotechnology, 32(12), 12311240. Sun W, Poschmann J, Cruz-Herrera Del Rosario R, Parikshak NN, Hajan HS, Kumar V, Ramasamy R, Belgard TG, Elanggovan B, Wong CC, et al. Histone acetylome-wide association study of autism spectrum disorder. Cell. 2016;167:138597.

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DNA immunoprecipitation (DIP)

2012;12:009446. Koch CM, Reck K, Shao K, Lin Q, Joussen S, Ziegler P, Walenda G, Drescher W, Opalka B, May T, et al. Pluripotent stem cells escape from senescence-associated DNA methylation changes. Genome Res. 2013;23:24859. 72. Labonte B, Yerko V, Gross J, Mechawar N, Meaney MJ, Szyf M, et al. Differential glucocorticoid receptor exon 1(B), 1(C), and 1(H) expression and methylation in suicide completers with a history of childhood abuse. Biol Psychiatry (2012) 72(1):418. doi: Glucosylation of 5hmC with an azide-containing glucose molecule and biotin allows for 5hmC enrichment using a biotin/streptavidin pulldown. 73. Martin-Blanco A, Ferrer M, Soler J, Salazar J, Vega D, Andion O, et al. Association between methylation of the glucocorticoid receptor gene, childhood maltreatment, and clinical severity in borderline personality disorder. J Psychiatr Res (2014) 57:3440. doi: 66. Cisternas CD, Cortes LR, Bruggeman EC, Yao B, Forger NG.

Methyl binding domain proteins (MBDs)

TET-mediated active DNA demethylation: Mechanism, function and beyond. Nature Reviews Genetics, 18(9), 517534. 47. Wang A, Nie W, Li H, Hou Y, Yu Z, Fan Q, et al. Epigenetic upregulation of corticotrophin-releasing hormone mediates postnatal maternal separation-induced memory deficiency. PloS One (2014) 9(4):e94394. doi: Bell CG, Xia Y, Yuan W, Gao F, Ward K, Roos L, Mangino M, Hysi PG, Bell J, Wang J, Spector TD. Novel regional age-associated DNA methylation changes within human common disease-associated loci. Genome Biol. 2016;17:193. 86. Murgatroyd C, Spengler D. Polycomb binding precedes early-life stress responsive DNA methylation at the Avp enhancer. PloS One (2014) 9(3):e90277. doi: Stubbs TM, Bonder MJ, Stark AK, Krueger F, Team BIAC, von Meyenn F, Stegle O, Reik W. Multi-tissue DNA methylation age predictor in mouse. Genome Biol. 2017;18:68. Martino D, Loke YJ, Gordon L, Ollikainen M, Cruickshank MN, Saffery R, Craig JM. Longitudinal, genome-scale analysis of DNA methylation in twins from birth to 18 months of age reveals rapid epigenetic change in early life and pair-specific effects of discordance.

2 of NSCLC cases and no methylation in healthy controls [70]. Hypermethylation of RASSF1A was detected in 33. 8 of NSCLC and not in healthy controls of benign pulmonary disease in the cohort of 80 patients [14]. 64. Lu J, McCarter M, Lian G, Esposito G, Capoccia E, Delli-Bovi LC, et al. Global hypermethylation in fetal cortex of Down syndrome due to DNMT3L overexpression. Hum Mol Genet (2016) 25(9):171427. doi: 41. Philibert RA, Sandhu H, Hollenbeck N, Gunter T, Adams W, Madan A. The relationship of 5HTT (SLC6A4) methylation and genotype on mRNA expression and liability to major depression and alcohol dependence in subjects from the Iowa Adoption Studies. Am J Med Genet B Neuropsychiatr Genet (2008) 147B(5):5439. doi: Sheng C, Jungverdorben J, Wiethoff H, Lin Q, Flitsch LJ, Eckert D, Hebisch M, Fischer J, Kesavan J, Weykopf B, et al. A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation. Nat Commun. 2018;9:4047. Ward MC, Wilson MD, Barbosa-Morais NL, Schmidt D, Stark R, Pan Q, Schwalie PC, Menon S, Lukk M, Watt S, et al. Latent regulatory potential of human-specific repetitive elements. Mol Cell.

Caroline Polly Eventos Encantadores

Distinct Expression Pattern of Epigenetic Machinery Genes in Blood Leucocytes and Brain Cortex of Depressive Patients. Mol Neurobiol (2019) 56(7):4697707. doi: Lung cancer is a commonly diagnosed and aggressive respiratory tumour with poor survival [1]. There are numerous subtypes to the disease with risk factors including age, tobacco smoking, and family history [1]. Initial screening for respiratory lesions is performed by computed tomography (CT), which is highly sensitive for the detection of lung cancer, but is subject to a high rate of false-positive results from the detection of benign tumours [7, 68]. There are serveral circulating biomarkers under investigation for screening of lung cancers; however, none exist with the accuracy to eliminate biopsy and histopathology for the final diagnosis [69]. Transmembrane protein with a single EGF-like and two follistatin domains (TMEFF2) is inactivated through promoter methylation in numerous cancers including non-small-cell lung cancer (NSCLC) [70]. Hypermethylation of TMEFF2 is more common in non-EGFR mutation female patients ( ) and subjects who have never smoked ( ) [70]. In this study, serum samples from 316 NSCLC patients and 50 healthy age-matched controls were used and TMEFF2 hypermethylation was detectable in 9.

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e1311 Koziol, M. J. , Bradshaw, C. R. , Allen, G. E. , Costa, A. S. H. , Frezza, C. , & Gurdon, J. B. (2016). Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications. Nature Structural and Molecular Biology, 23(1), 2430. Zhang Q, Marioni RE, Robinson MR, Higham J, Sproul D, Wray NR, Deary IJ, McRae AF, Visscher PM. Genotype effects contribute to variation in longitudinal methylome patterns in older people. Genome Medicine. 2018;10:75. The most widely studied epigenetic alteration to date is the methylation (5-methylcytosines) of DNA at the CpG dinucleotides, which are highly concentrated in the CpG islands within the promoter region or near the first exon [13]. Varying degrees of methylation within a genes CpG islands leads to various levels of gene silencing, and in cancer, promoter hypermethylation has been linked to the silencing of tumour suppressor genes and subsequent oncogenesis [1416].

Developmental changes and sex differences in DNA methylation and demethylation in hypothalamic regions of the mouse brain. Epigenetics (2020) 15(1-2):7284. doi: The non-linear rate of clock ticking and what may influence this is not precisely defined. The Horvath clock is seen to run the fastest during development, while during adulthood, linear associations are observed with clock years increasing at the same rate as chronological years, on average. The biological aging marker of epigenetic age acceleration assessed from birth shows minimal variation to adolescence and then increases with age [103] and is hypothesized to be influenced by developmental changes during childhood and adolescence [104]. Campisi J, Kapahi P, Lithgow GJ, Melov S, Newman JC, Verdin E. From discoveries in ageing research to therapeutics for healthy ageing. Nature. 2019;571:18392. 20. Fan G, Martinowich K, Chin MH, He F, Fouse SD, Hutnick L, et al.

Alisch RS, Barwick BG, Chopra P, Myrick LK, Satten GA, Conneely KN, Warren ST. Age-associated DNA methylation in pediatric populations. Genome Res. 2012;22:62332.

Screening for gene mutations is a common practice to test for an individuals predisposition to cancer but cannot reflect the current status or activity of disease [17]. Additionally, promoter methylation is often easier to evaluate due to its defined location within the promoter region of specific genes. Comparatively, locating gene mutations is more complex as they can occur at unsuspected sites within the gene that may be challenging to pinpoint. Some epigenetic markers have value in the early detection of cancers due to their involvement in the initiation of carcinogenic pathways [18, 19]. As a consequence, epigenetic biomarkers have a high potential and wide scope to be implemented as early diagnosis biomarkers. 3. Jesulola E, Micalos P, Baguley IJ. Understanding the pathophysiology of depression: From monoamines to the neurogenesis hypothesis model - are we there yet? Behav Brain Res (2018) 341:7990. doi: Wu, X. , & Zhang, Y. (2017).

Relton CL, Davey Smith G. Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease. Int J Epidemiol. 2012;41:16176.

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